PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 1082aa    MW: 122614 Da    PI: 8.9662
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894080genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.65.9e-10435520998
                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                +++k++ l +p + + e ++ +  +  + led++g++ +v+l  +  +g+  + +GW++F++++ +k g+f++F+ + + ++  ++v++f 
  462894080 435 NNFKES-LLIPPEVVPELEHLT--NHHVYLEDSEGKVSKVRL--SVVDGSLAFDQGWNNFASDHLIKWGEFLLFECSAEsTSDYFFVRIFG 520
                455555.899999998887664..457***************..9999999************************9877677777888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-12425521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-14426522IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264426522IPR003340B3 DNA binding domain
CDDcd100172.91E-8428519No hitNo description
PfamPF023627.5E-8431520IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MQIVEGKVKN INTPPVFLEK EKEKERKRPN NDNCEKNTRT DKEGVKNKRN DNYKEGEKNR  60
RTDKCKEGDK SKRTDSYREG KKKISNEVNN GKASLTSFDK EKRKEKLKIS CSKKNMQTED  120
VMEEVVENWN DHSKLNSRKV SCKREKIRKR SNNSNCGKKI HGNGDEREET NMWNCDFKVK  180
DEEVSAAFSE NEKNKKRPTS TNREKKKLQS DVKGTQKQMR DLDSKMRNEE SSAAFFEKEH  240
EQKRPHSTNS QKKVQRDDKK CENNMQNGHY KVKDRRVSTT SFEKDKKRKM SSSDKVEKKM  300
NGAYMGTPLS VSKNKMRRND GRKKTEPITS AAKEKKRRPD GSTEKNAPHD SKEKKRNVPS  360
DFKEGKMMVP TDSNNKKRKR EEPHAVFKKE KRMQSDDNEK KIRSGNRNGK EKKNYGSGEK  420
KKRNTPLSFF KVIFNNFKES LLIPPEVVPE LEHLTNHHVY LEDSEGKVSK VRLSVVDGSL  480
AFDQGWNNFA SDHLIKWGEF LLFECSAEST SDYFFVRIFG RDSRERLHFD VGRKKEGARK  540
KKIHTNTHGD LMSLEVKLED TEGDCIFSGE YTGRKDPETH HVTVQTKEDP KRVECMVGSG  600
PVPLDNMNGN EVIQQCRTQG MSPICSKREI LIVDSEPLIH ENNIARLTTS TADSNTQHMP  660
AHTNEDLRRI HSGTGNGQST VIDDEKGILP GVECGTKSTS PKCGIKRVAS VDAAPLTHEN  720
DYMSKHDLKL HDSGEDLRWK QEISSIHLEC TTAANKYNNH GEMNISRDVC RKYEAPGGFR  780
CLEKWKSRIV SFRSVLDDTE LFKPESTRKT DSQPVLAVEY DAVGLNNGDK CFLSKDTHAC  840
SQPVLTMPVK DPSSPDGVTK CEQDGTEINH SINGEGTSVV QLQTKKEQLE TLGSILNGPG  900
DNNLSCANLI VVCNSGPVEL NPARSEGTFA LIESQPTVHI KSPSCPDRIC NFGSSRTEVN  960
DNVDGEAKLE AKMGHLEPMD TVGSQSTDIP VCANNVAARQ SDHCVFKQED KNSIDFFTHV  1020
KTEILTPVKP EILEPDERSL LKINLQFCIP NSTQKLLLSA STCLHGTALQ RYTKLCGNHD  1080
FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312323KNKMRRNDGRKK
2321337RKKTEPITSAAKEKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-07B3 family protein